The PISM wrapper for a subset of the NetCDF C API. More...
#include <NCFile.hh>
Inheritance diagram for pism::io::NCFile:Public Types | |
| typedef std::shared_ptr< NCFile > | Ptr |
Public Member Functions | |
| NCFile (MPI_Comm com) | |
| virtual | ~NCFile ()=default |
| void | open (const std::string &filename, io::Mode mode) |
| void | create (const std::string &filename) |
| void | sync () const |
| void | close () |
| void | enddef () const |
| void | redef () const |
| void | def_dim (const std::string &name, size_t length) const |
| void | inq_dimid (const std::string &dimension_name, bool &exists) const |
| void | inq_dimlen (const std::string &dimension_name, unsigned int &result) const |
| void | inq_unlimdim (std::string &result) const |
| void | def_var (const std::string &name, io::Type nctype, const std::vector< std::string > &dims) const |
| void | def_var_chunking (const std::string &name, std::vector< size_t > &dimensions) const |
| void | get_vara_double (const std::string &variable_name, const std::vector< unsigned int > &start, const std::vector< unsigned int > &count, double *ip) const |
| void | put_vara_double (const std::string &variable_name, const std::vector< unsigned int > &start, const std::vector< unsigned int > &count, const double *op) const |
| void | write_darray (const std::string &variable_name, const Grid &grid, unsigned int z_count, bool time_dependent, unsigned int record, const double *input) |
| void | get_varm_double (const std::string &variable_name, const std::vector< unsigned int > &start, const std::vector< unsigned int > &count, const std::vector< unsigned int > &imap, double *ip) const |
| void | inq_nvars (int &result) const |
| void | inq_vardimid (const std::string &variable_name, std::vector< std::string > &result) const |
| void | inq_varnatts (const std::string &variable_name, int &result) const |
| void | inq_varid (const std::string &variable_name, bool &result) const |
| void | inq_varname (unsigned int j, std::string &result) const |
| void | set_compression_level (int level) const |
| void | get_att_double (const std::string &variable_name, const std::string &att_name, std::vector< double > &result) const |
| void | get_att_text (const std::string &variable_name, const std::string &att_name, std::string &result) const |
| void | put_att_double (const std::string &variable_name, const std::string &att_name, io::Type xtype, const std::vector< double > &data) const |
| void | put_att_text (const std::string &variable_name, const std::string &att_name, const std::string &value) const |
| void | inq_attname (const std::string &variable_name, unsigned int n, std::string &result) const |
| void | inq_atttype (const std::string &variable_name, const std::string &att_name, io::Type &result) const |
| void | set_fill (int fillmode, int &old_modep) const |
| std::string | filename () const |
| void | del_att (const std::string &variable_name, const std::string &att_name) const |
Protected Member Functions | |
| virtual void | open_impl (const std::string &filename, io::Mode mode)=0 |
| virtual void | create_impl (const std::string &filename)=0 |
| virtual void | sync_impl () const =0 |
| virtual void | close_impl ()=0 |
| virtual void | enddef_impl () const =0 |
| virtual void | redef_impl () const =0 |
| virtual void | def_dim_impl (const std::string &name, size_t length) const =0 |
| virtual void | inq_dimid_impl (const std::string &dimension_name, bool &exists) const =0 |
| virtual void | inq_dimlen_impl (const std::string &dimension_name, unsigned int &result) const =0 |
| virtual void | inq_unlimdim_impl (std::string &result) const =0 |
| virtual void | def_var_impl (const std::string &name, io::Type nctype, const std::vector< std::string > &dims) const =0 |
| virtual void | def_var_chunking_impl (const std::string &name, std::vector< size_t > &dimensions) const |
| virtual void | get_vara_double_impl (const std::string &variable_name, const std::vector< unsigned int > &start, const std::vector< unsigned int > &count, double *ip) const =0 |
| virtual void | put_vara_double_impl (const std::string &variable_name, const std::vector< unsigned int > &start, const std::vector< unsigned int > &count, const double *op) const =0 |
| virtual void | write_darray_impl (const std::string &variable_name, const Grid &grid, unsigned int z_count, bool time_dependent, unsigned int record, const double *input) |
| virtual void | get_varm_double_impl (const std::string &variable_name, const std::vector< unsigned int > &start, const std::vector< unsigned int > &count, const std::vector< unsigned int > &imap, double *ip) const =0 |
| virtual void | inq_nvars_impl (int &result) const =0 |
| virtual void | inq_vardimid_impl (const std::string &variable_name, std::vector< std::string > &result) const =0 |
| virtual void | inq_varnatts_impl (const std::string &variable_name, int &result) const =0 |
| virtual void | inq_varid_impl (const std::string &variable_name, bool &exists) const =0 |
| virtual void | inq_varname_impl (unsigned int j, std::string &result) const =0 |
| virtual void | set_compression_level_impl (int level) const =0 |
| virtual void | get_att_double_impl (const std::string &variable_name, const std::string &att_name, std::vector< double > &result) const =0 |
| virtual void | get_att_text_impl (const std::string &variable_name, const std::string &att_name, std::string &result) const =0 |
| virtual void | put_att_double_impl (const std::string &variable_name, const std::string &att_name, io::Type xtype, const std::vector< double > &data) const =0 |
| virtual void | put_att_text_impl (const std::string &variable_name, const std::string &att_name, const std::string &value) const =0 |
| virtual void | inq_attname_impl (const std::string &variable_name, unsigned int n, std::string &result) const =0 |
| virtual void | inq_atttype_impl (const std::string &variable_name, const std::string &att_name, io::Type &result) const =0 |
| virtual void | set_fill_impl (int fillmode, int &old_modep) const =0 |
| virtual void | del_att_impl (const std::string &variable_name, const std::string &att_name) const =0 |
Protected Attributes | |
| MPI_Comm | m_com |
| int | m_file_id |
| std::string | m_filename |
Private Attributes | |
| bool | m_define_mode |
Detailed Description
The PISM wrapper for a subset of the NetCDF C API.
The goal of this class is to hide the fact that we need to communicate data to and from the processor zero. Using this wrapper we should be able to write code that looks good and works both on 1-processor and multi-processor systems.
Moreover, this way we can switch underlying I/O implementations.
Notes:
- It uses C++ STL strings instead of C character arrays
- It hides NetCDF ncid, dimid and varid and uses strings to reference dimensions and variables instead.
- This class does not and should not use any PETSc API calls.
- This wrapper provides access to a very small portion of the NetCDF C API. (Only calls used in PISM.) This is intentional.
- Methods of this class should do what corresponding NetCDF C API calls do, no more and no less.
The documentation for this class was generated from the following files:
